The Arkgene Cloud Platform : Apply
Bioinformatics Pipelines
- From assembled genome to structural prediction (tRNA and rRNA), gene prediction and gene functional annotation
- In one click!
- Fully compatible with Arkgene visualization tools
- Automatically evaluate the assembly quality and completeness of your genome using BUSCO (Benchmarking Universal Single-Copy Orthologs)
- Detailed algorithm consists of tBLASTn, Augustus and HMMER3 running in background
Analytics Tools
- Customize your own inhouse BLAST database from compatible input file (e.g. fasta, fas and fa)
- Run various type of BLAST analyses (e.g. BLASTn, BLASTp and BLASTx) against the customized BLAST database
- Visualize your BLAST results in sequence alignment form or BLAST summary form
- Electronic PCR: a search algorithm for in silico PCR amplification that identifies specific sequence homology between the DNA template (e.g. genome) and designed PCR primers
- Run using Primer3 and BLAST
- A quality control tool to examine the quality of high throughput raw sequencing data
- Supports input data from BAM, SAM or Fastq format
- Offline operation and automatically output the results to an HTML based summary report with graphs and tables
- Automatically generate a brief summary of sequence file such as number of sequences, total number of bases, N25, 50 and N75 lengths, GC content etc
- Supports various sequence file such as Fasta, Fas and Fa files
- Retrieve the selected nucleotide or protein sequences from Fasta sequence file
- A text file containing list of sequence ID is required
- Supports the conversion of commonly used file format in bioinformatics analyses, such as conversion of BAM to SAM and vice versa